3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGCAG*UCAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JT3_138 not in the Motif Atlas
Homologous match to IL_5J7L_027
Geometric discrepancy: 0.1395
The information below is about IL_5J7L_027
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

7JT3|1|3|C|580
7JT3|1|3|G|581
7JT3|1|3|C|582
7JT3|1|3|A|583
7JT3|1|3|G|584
*
7JT3|1|3|U|757
7JT3|1|3|C|758
7JT3|1|3|A|759
7JT3|1|3|G|760
7JT3|1|3|G|761

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain M
30S ribosomal protein S8
Chain Q
30S ribosomal protein S12
Chain T
30S ribosomal protein S15
Chain V
30S ribosomal protein S17

Coloring options:


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