IL_7JT3_171

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT3_171 not in the Motif Atlas

Geometric match to IL_1Z7F_002

Geometric discrepancy: 0.1171

The information below is about IL_1Z7F_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

7JT3|1|3|C|1409
7JT3|1|3|A|1410
7JT3|1|3|C|1411
*
7JT3|1|3|G|1489
7JT3|1|3|C|1490
7JT3|1|3|G|1491

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 8

Peptidyl-tRNA hydrolase ArfB

Chain Q

30S ribosomal protein S12