IL_7JT3_182

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGGCUUUGAAGUGU*GCAUGGAGCCGACCUUGAAAUAC

Length

39 nucleotides

Bulged bases

7JT3|1|1|U|2130, 7JT3|1|1|U|2131, 7JT3|1|1|U|2132, 7JT3|1|1|A|2135, 7JT3|1|1|U|2155, 7JT3|1|1|A|2158, 7JT3|1|1|C|2160, 7JT3|1|1|C|2165, 7JT3|1|1|U|2167, 7JT3|1|1|G|2168, 7JT3|1|1|A|2171, 7JT3|1|1|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JT3|1|1|G|2124
7JT3|1|1|G|2125
7JT3|1|1|A|2126
7JT3|1|1|G|2127
7JT3|1|1|G|2128
7JT3|1|1|C|2129
7JT3|1|1|U|2130
7JT3|1|1|U|2131
7JT3|1|1|U|2132
7JT3|1|1|G|2133
7JT3|1|1|A|2134
7JT3|1|1|A|2135
7JT3|1|1|G|2136
7JT3|1|1|U|2137
7JT3|1|1|G|2138
7JT3|1|1|U|2139
*
7JT3|1|1|G|2152
7JT3|1|1|C|2153
7JT3|1|1|A|2154
7JT3|1|1|U|2155
7JT3|1|1|G|2156
7JT3|1|1|G|2157
7JT3|1|1|A|2158
7JT3|1|1|G|2159
7JT3|1|1|C|2160
7JT3|1|1|C|2161
7JT3|1|1|G|2162
7JT3|1|1|A|2163
7JT3|1|1|C|2164
7JT3|1|1|C|2165
7JT3|1|1|U|2166
7JT3|1|1|U|2167
7JT3|1|1|G|2168
7JT3|1|1|A|2169
7JT3|1|1|A|2170
7JT3|1|1|A|2171
7JT3|1|1|U|2172
7JT3|1|1|A|2173
7JT3|1|1|C|2174

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain a

50S ribosomal protein L1