IL_7JU1_006

3D structure

PDB id

7JU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The FARFAR-NMR Ensemble of 29-mer HIV-1 Trans-activation Response Element RNA (N=20)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

7JU1|4|X|A|35

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JU1_006 not in the Motif Atlas

Geometric match to IL_8C3A_031

Geometric discrepancy: 0.2773

The information below is about IL_8C3A_031

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7JU1|4|X|C|29
7JU1|4|X|C|30
*
7JU1|4|X|G|34
7JU1|4|X|A|35
7JU1|4|X|G|36

Current chains

Chain X

RNA (29-MER)

Nearby chains