7JU1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7JU1_001 | 1/X/29:36 | tRNA anticodon loop | geometric HL_3RG5_006 HL_87268.3 | |
| HL_7JU1_002 | 2/X/30:34 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_7JU1_003 | 3/X/29:36 | No text annotation | geometric HL_8C3A_038 NA | |
| HL_7JU1_004 | 4/X/30:34 | No text annotation | geometric HL_1WZ2_007 HL_75660.9 | |
| HL_7JU1_005 | 5/X/29:36 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7JU1_006 | 6/X/29:36 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7JU1_007 | 7/X/29:36 | No text annotation | ||
| HL_7JU1_008 | 8/X/29:36 | No text annotation | ||
| HL_7JU1_009 | 9/X/29:36 | No text annotation | ||
| HL_7JU1_010 | 10/X/29:36 | No text annotation | geometric HL_2ZZM_002 HL_33487.2 | |
| HL_7JU1_011 | 11/X/30:34 | No text annotation | geometric HL_1WZ2_007 HL_75660.9 | |
| HL_7JU1_012 | 12/X/30:34 | No text annotation | ||
| HL_7JU1_013 | 13/X/30:34 | No text annotation | geometric HL_3DD2_001 HL_49073.1 | |
| HL_7JU1_014 | 14/X/29:36 | No text annotation | ||
| HL_7JU1_015 | 15/X/29:36 | No text annotation | ||
| HL_7JU1_016 | 16/X/30:34 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.4 | |
| HL_7JU1_017 | 17/X/29:36 | No text annotation | ||
| HL_7JU1_018 | 18/X/29:36 | UNCG variation | geometric HL_7A0S_023 HL_91813.1 | |
| HL_7JU1_019 | 19/X/29:36 | No text annotation | ||
| HL_7JU1_020 | 20/X/29:36 | No text annotation | geometric HL_7VTI_001 HL_89167.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7JU1_001 | 1/X/22:26, 1/X/39:40 | Multiple bulged bases | geometric IL_7Q80_003 IL_05670.1 | |
| IL_7JU1_002 | 2/X/22:26, 2/X/39:40 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7JU1_003 | 2/X/29:30, 2/X/34:36 | Single bulged A | geometric IL_4WF9_022 IL_14190.3 | |
| IL_7JU1_004 | 3/X/22:26, 3/X/39:40 | Multiple bulged bases | geometric IL_8C3A_400 NA | |
| IL_7JU1_005 | 4/X/22:26, 4/X/39:40 | Multiple bulged bases | geometric IL_7Q80_003 IL_05670.1 | |
| IL_7JU1_006 | 4/X/29:30, 4/X/34:36 | Single bulged A | geometric IL_8C3A_031 NA | |
| IL_7JU1_007 | 5/X/22:26, 5/X/39:40 | Major groove intercalation | geometric IL_4V9F_021 IL_71421.4 | |
| IL_7JU1_008 | 6/X/22:26, 6/X/39:40 | Major groove minor groove platform; mini C-loop | geometric IL_1U9S_004 IL_73108.3 | |
| IL_7JU1_009 | 7/X/22:26, 7/X/39:40 | Minor groove platform | geometric IL_3IWN_005 IL_87975.1 | |
| IL_7JU1_010 | 8/X/22:26, 8/X/39:40 | Multiple bulged bases | geometric IL_5WLH_001 IL_71421.4 | |
| IL_7JU1_011 | 9/X/22:26, 9/X/39:40 | No text annotation | ||
| IL_7JU1_012 | 10/X/21:26, 10/X/39:41 | No text annotation | ||
| IL_7JU1_013 | 11/X/21:26, 11/X/39:41 | No text annotation | ||
| IL_7JU1_014 | 11/X/29:30, 11/X/34:36 | Single bulged A | geometric IL_4WF9_022 IL_14190.3 | |
| IL_7JU1_015 | 12/X/21:26, 12/X/39:41 | No text annotation | ||
| IL_7JU1_016 | 12/X/29:30, 12/X/34:36 | Single bulged A | geometric IL_8C3A_031 NA | |
| IL_7JU1_017 | 13/X/22:26, 13/X/39:40 | No text annotation | ||
| IL_7JU1_018 | 13/X/29:30, 13/X/34:36 | Single bulged A | geometric IL_8C3A_031 NA | |
| IL_7JU1_019 | 14/X/22:26, 14/X/39:40 | No text annotation | ||
| IL_7JU1_020 | 15/X/21:26, 15/X/39:41 | No text annotation | ||
| IL_7JU1_021 | 16/X/22:26, 16/X/39:40 | No text annotation | ||
| IL_7JU1_022 | 16/X/29:30, 16/X/34:36 | Single bulged A | geometric IL_5AOX_002 IL_14190.3 | |
| IL_7JU1_023 | 17/X/22:26, 17/X/39:40 | No text annotation | ||
| IL_7JU1_024 | 18/X/22:26, 18/X/39:40 | No text annotation | ||
| IL_7JU1_025 | 19/X/21:26, 19/X/39:41 | No text annotation | ||
| IL_7JU1_026 | 20/X/22:26, 20/X/39:40 | No text annotation |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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