IL_7K00_012

3D structure

PDB id

7K00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome at 2 Angstrom Resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7K00|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K00_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1015

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7K00|1|A|G|147
7K00|1|A|G|148
7K00|1|A|A|149
7K00|1|A|U|150
7K00|1|A|A|151
7K00|1|A|A|152
7K00|1|A|C|153
*
7K00|1|A|G|168
7K00|1|A|C|169
7K00|1|A|U|170
7K00|1|A|A|171
7K00|1|A|A|172
7K00|1|A|U|173
7K00|1|A|A|174
7K00|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20