IL_7K00_136

3D structure

PDB id

7K00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome at 2 Angstrom Resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K00_136 not in the Motif Atlas

Geometric match to IL_5J7L_318

Geometric discrepancy: 0.0599

The information below is about IL_5J7L_318

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

7K00|1|a|G|1933
7K00|1|a|C|1934
*
7K00|1|a|G|1964
7K00|1|a|C|1965
7K00|1|a|A|1966
7K00|1|a|C|1967

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Transfer RNA; tRNA