IL_7K4L_003

3D structure

PDB id

7K4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dengue 5'UTR SLA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUCU*AGUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K4L_003 not in the Motif Atlas

Geometric match to IL_1HYS_004

Geometric discrepancy: 0.3269

The information below is about IL_1HYS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

7K4L|3|A|G|11
7K4L|3|A|U|12
7K4L|3|A|C|13
7K4L|3|A|U|14
*
7K4L|3|A|A|27
7K4L|3|A|G|28
7K4L|3|A|U|29
7K4L|3|A|U|30
7K4L|3|A|C|31

Current chains

Chain A

DenvSLA RNA

Nearby chains