3D structure

PDB id
7K50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation non-frameshifting(CCA-A) complex (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7K50_006 not in the Motif Atlas
Homologous match to IL_7RQB_006
Geometric discrepancy: 0.1077
The information below is about IL_7RQB_006
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.7
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

7K50|1|1|G|188
7K50|1|1|G|189
7K50|1|1|A|190
7K50|1|1|A|191
7K50|1|1|C|192
7K50|1|1|U|193
7K50|1|1|G|194
*
7K50|1|1|C|201
7K50|1|1|U|202
7K50|1|1|A|203
7K50|1|1|A|204
7K50|1|1|G|205
7K50|1|1|U|206
7K50|1|1|A|207
7K50|1|1|C|208

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L35
Chain l
50S ribosomal protein L15
Chain x
50S ribosomal protein L28

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