3D structure

PDB id
7K50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation non-frameshifting(CCA-A) complex (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
7K50|1|1|A|1801, 7K50|1|1|C|1816, 7K50|1|1|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7K50_069 not in the Motif Atlas
Homologous match to IL_7RQB_070
Geometric discrepancy: 0.1124
The information below is about IL_7RQB_070
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.3
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

7K50|1|1|U|1798
7K50|1|1|G|1799
7K50|1|1|C|1800
7K50|1|1|A|1801
7K50|1|1|A|1802
7K50|1|1|A|1803
7K50|1|1|C|1804
*
7K50|1|1|G|1813
7K50|1|1|G|1814
7K50|1|1|A|1815
7K50|1|1|C|1816
7K50|1|1|G|1817
7K50|1|1|U|1818
7K50|1|1|A|1819
7K50|1|1|U|1820
7K50|1|1|A|1821

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA
Chain b
50S ribosomal protein L2

Coloring options:


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