IL_7K50_078

3D structure

PDB id

7K50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation non-frameshifting(CCA-A) complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7K50|1|1|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K50_078 not in the Motif Atlas

Homologous match to IL_7A0S_075

Geometric discrepancy: 0.1122

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.18

Basepair signature

cWW-L-cWW

Number of instances in this motif group

122

Unit IDs

7K50|1|1|G|2067
7K50|1|1|U|2068
7K50|1|1|G|2069
*
7K50|1|1|C|2442
7K50|1|1|C|2443

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15