3D structure

PDB id
7K50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation non-frameshifting(CCA-A) complex (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7K50_177 not in the Motif Atlas
Homologous match to IL_4WF9_117
Geometric discrepancy: 0.0943
The information below is about IL_4WF9_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

7K50|1|1|G|1666
7K50|1|1|G|1667
7K50|1|1|A|1668
7K50|1|1|A|1669
7K50|1|1|C|1670
7K50|1|1|U|1671
7K50|1|1|A|1672
7K50|1|1|G|1673
7K50|1|1|G|1674
*
7K50|1|1|C|1990
7K50|1|1|U|1991
7K50|1|1|G|1992
7K50|1|1|U|1993
7K50|1|1|C|1994

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L3
Chain k
50S ribosomal protein L14

Coloring options:


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