3D structure

PDB id
7K52 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAAGGG*CAUUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7K52_133 not in the Motif Atlas
Geometric match to IL_5J7L_023
Geometric discrepancy: 0.2133
The information below is about IL_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70801.1
Basepair signature
cWW-cWW-L-R-tWW-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

7K52|1|3|G|450
7K52|1|3|A|451
7K52|1|3|A|452
7K52|1|3|G|453
7K52|1|3|G|454
7K52|1|3|G|455
*
7K52|1|3|C|477
7K52|1|3|A|478
7K52|1|3|U|479
7K52|1|3|U|480
7K52|1|3|G|481
7K52|1|3|A|482
7K52|1|3|C|483

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain U
30S ribosomal protein S16

Coloring options:


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