IL_7K52_156

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

7K52|1|3|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K52_156 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.3692

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7K52|1|3|C|1051
7K52|1|3|U|1052
7K52|1|3|G|1053
7K52|1|3|C|1054
7K52|1|3|A|1055
7K52|1|3|U|1056
*
7K52|1|3|A|1204
7K52|1|3|U|1205
7K52|1|3|G|1206
7K52|1|3|G|1207

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S3

Chain O

30S ribosomal protein S10

Chain S

30S ribosomal protein S14