3D structure

PDB id
7K52 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UACAAAG*CAUAAAG
Length
14 nucleotides
Bulged bases
7K52|1|3|U|1286
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7K52_163 not in the Motif Atlas
Homologous match to IL_5J7L_054
Geometric discrepancy: 0.1782
The information below is about IL_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

7K52|1|3|U|1247
7K52|1|3|A|1248
7K52|1|3|C|1249
7K52|1|3|A|1250
7K52|1|3|A|1251
7K52|1|3|A|1252
7K52|1|3|G|1253
*
7K52|1|3|C|1284
7K52|1|3|A|1285
7K52|1|3|U|1286
7K52|1|3|A|1287
7K52|1|3|A|1288
7K52|1|3|A|1289
7K52|1|3|G|1290

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain L
30S ribosomal protein S7
Chain N
30S ribosomal protein S9
Chain O
30S ribosomal protein S10
Chain S
30S ribosomal protein S14

Coloring options:


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