3D structure

PDB id
7K53 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UCCCAAAG*CA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7K53_033 not in the Motif Atlas
Homologous match to IL_5J7L_278
Geometric discrepancy: 0.1024
The information below is about IL_5J7L_278
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

7K53|1|1|U|1004
7K53|1|1|C|1005
7K53|1|1|C|1006
7K53|1|1|C|1007
7K53|1|1|A|1008
7K53|1|1|A|1009
7K53|1|1|A|1010
7K53|1|1|G|1011
*
7K53|1|1|C|1150
7K53|1|1|A|1151

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain j
50S ribosomal protein L13
Chain q
50S ribosomal protein L20

Coloring options:


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