IL_7K54_085

3D structure

PDB id

7K54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGA*UCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K54_085 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2874

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7K54|1|1|U|2139
7K54|1|1|G|2140
7K54|1|1|G|2141
7K54|1|1|A|2142
*
7K54|1|1|U|2149
7K54|1|1|C|2150
7K54|1|1|U|2151
7K54|1|1|G|2152

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S11

Chain a

50S ribosomal protein L1