3D structure

PDB id
7K54 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7K54_100 not in the Motif Atlas
Homologous match to IL_7A0S_094
Geometric discrepancy: 0.1006
The information below is about IL_7A0S_094
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

7K54|1|1|C|2652
7K54|1|1|U|2653
7K54|1|1|A|2654
7K54|1|1|G|2655
7K54|1|1|U|2656
7K54|1|1|A|2657
7K54|1|1|C|2658
*
7K54|1|1|G|2663
7K54|1|1|G|2664
7K54|1|1|A|2665
7K54|1|1|C|2666
7K54|1|1|C|2667
7K54|1|1|G|2668

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 8
Elongation factor G
Chain f
50S ribosomal protein L6

Coloring options:


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