IL_7K54_108

3D structure

PDB id

7K54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K54_108 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.1175

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

7K54|1|1|U|2847
7K54|1|1|G|2848
7K54|1|1|U|2849
7K54|1|1|A|2850
7K54|1|1|A|2851
7K54|1|1|G|2852
*
7K54|1|1|U|2865
7K54|1|1|U|2866
7K54|1|1|G|2867
7K54|1|1|A|2868
7K54|1|1|G|2869

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19