IL_7K5I_014

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7K5I|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_014 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1243

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7K5I|1|2|G|145
7K5I|1|2|G|146
7K5I|1|2|A|147
7K5I|1|2|U|148
7K5I|1|2|A|149
7K5I|1|2|A|150
7K5I|1|2|C|151
*
7K5I|1|2|G|167
7K5I|1|2|C|168
7K5I|1|2|U|169
7K5I|1|2|A|170
7K5I|1|2|A|171
7K5I|1|2|U|172
7K5I|1|2|A|173
7K5I|1|2|C|174

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24