IL_7K5I_027

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_027 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1295

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7K5I|1|2|C|491
7K5I|1|2|C|492
7K5I|1|2|A|493
7K5I|1|2|C|494
7K5I|1|2|U|495
*
7K5I|1|2|A|508
7K5I|1|2|G|509

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24