IL_7K5I_030

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

7K5I|1|2|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_030 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.267

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

7K5I|1|2|G|535
7K5I|1|2|A|536
7K5I|1|2|C|537
*
7K5I|1|2|G|546
7K5I|1|2|G|547
7K5I|1|2|C|548
7K5I|1|2|C|549

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain e

40S ribosomal protein S30