IL_7K5I_036

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_036 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1326

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7K5I|1|2|C|663
7K5I|1|2|A|664
7K5I|1|2|G|665
*
7K5I|1|2|C|1162
7K5I|1|2|C|1163
7K5I|1|2|G|1164

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain C

40S ribosomal protein S2

Chain X

40S ribosomal protein S23