IL_7K5I_037

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7K5I|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_037 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1381

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

7K5I|1|2|G|665
7K5I|1|2|U|666
7K5I|1|2|U|667
7K5I|1|2|A|668
7K5I|1|2|A|669
7K5I|1|2|A|670
7K5I|1|2|A|671
*
7K5I|1|2|U|1161
7K5I|1|2|C|1162

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain X

40S ribosomal protein S23

Chain a

40S ribosomal protein S26