IL_7K5I_043
3D structure
- PDB id
- 7K5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-COV-2 nsp1 in complex with human 40S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7K5I_043 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.2445
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7K5I|1|2|G|807
7K5I|1|2|A|808
7K5I|1|2|A|809
7K5I|1|2|A|810
7K5I|1|2|A|811
7K5I|1|2|A|812
7K5I|1|2|A|813
7K5I|1|2|U|814
7K5I|1|2|U|815
*
7K5I|1|2|A|849
7K5I|1|2|C|850
7K5I|1|2|C|851
7K5I|1|2|G|852
7K5I|1|2|C|853
7K5I|1|2|A|854
7K5I|1|2|G|855
7K5I|1|2|C|856
Current chains
- Chain 2
- 40S ribosomal rRNA18S
Nearby chains
- Chain E
- 40S ribosomal protein S4, X isoform
- Chain J
- 40S ribosomal protein S9
- Chain L
- 40S ribosomal protein S11
- Chain W
- 40S ribosomal protein S15a
Coloring options: