IL_7K5I_058

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_058 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0844

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7K5I|1|2|G|1168
7K5I|1|2|G|1169
7K5I|1|2|A|1170
7K5I|1|2|G|1171
7K5I|1|2|U|1172
7K5I|1|2|A|1173
7K5I|1|2|U|1174
7K5I|1|2|G|1175
*
7K5I|1|2|U|1186
7K5I|1|2|G|1187
7K5I|1|2|A|1188
7K5I|1|2|A|1189
7K5I|1|2|A|1190
7K5I|1|2|C|1191

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain X

40S ribosomal protein S23

Chain h

60S ribosomal protein L41