IL_7K5I_075

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

7K5I|1|2|C|1403, 7K5I|1|2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_075 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1178

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7K5I|1|2|A|1402
7K5I|1|2|C|1403
7K5I|1|2|U|1404
7K5I|1|2|A|1405
*
7K5I|1|2|U|1441
7K5I|1|2|U|1442
7K5I|1|2|C|1443
7K5I|1|2|U|1444

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain D

40S ribosomal protein S3

Chain Q

40S ribosomal protein S16

Chain U

40S ribosomal protein S20