IL_7K5I_086

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_086 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.2181

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7K5I|1|2|C|1717
7K5I|1|2|G|1718
7K5I|1|2|A|1719
7K5I|1|2|U|1720
*
7K5I|1|2|A|1813
7K5I|1|2|G|1814
7K5I|1|2|A|1815
7K5I|1|2|G|1816

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain h

60S ribosomal protein L41