IL_7K5I_089

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_089 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1121

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7K5I|1|2|U|1733
7K5I|1|2|G|1734
7K5I|1|2|A|1735
7K5I|1|2|G|1736
*
7K5I|1|2|C|1798
7K5I|1|2|G|1799
7K5I|1|2|A|1800
7K5I|1|2|A|1801

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8