IL_7KGB_026

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_026 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0883

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7KGB|1|A|U|832
7KGB|1|A|G|833
7KGB|1|A|A|834
7KGB|1|A|A|835
7KGB|1|A|G|836
*
7KGB|1|A|U|853
7KGB|1|A|G|854
7KGB|1|A|G|855
7KGB|1|A|A|856
7KGB|1|A|G|857

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2