IL_7KGB_028

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

7KGB|1|A|G|905, 7KGB|1|A|A|917, 7KGB|1|A|A|918, 7KGB|1|A|U|919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_028 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0789

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7KGB|1|A|G|904
7KGB|1|A|G|905
7KGB|1|A|G|906
*
7KGB|1|A|C|916
7KGB|1|A|A|917
7KGB|1|A|A|918
7KGB|1|A|U|919
7KGB|1|A|C|920

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain S

50S ribosomal protein L22