IL_7KGB_047

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7KGB|1|A|C|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_047 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1555

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7KGB|1|A|C|1339
7KGB|1|A|A|1340
7KGB|1|A|G|1341
7KGB|1|A|C|1342
7KGB|1|A|G|1343
7KGB|1|A|A|1344
7KGB|1|A|A|1345
7KGB|1|A|G|1346
*
7KGB|1|A|U|1365
7KGB|1|A|G|1366
7KGB|1|A|G|1367
7KGB|1|A|A|1368
7KGB|1|A|G|1369

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20