IL_7KGB_062

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAA*UCUGC

Length

9 nucleotides

Bulged bases

7KGB|1|A|U|1796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_062 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1926

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7KGB|1|A|G|1670
7KGB|1|A|G|1671
7KGB|1|A|A|1672
7KGB|1|A|A|1673
*
7KGB|1|A|U|1794
7KGB|1|A|C|1795
7KGB|1|A|U|1796
7KGB|1|A|G|1797
7KGB|1|A|C|1798

Current chains

Chain A

23S rRNA

Nearby chains