IL_7KGB_079

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_079 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1857

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7KGB|1|A|U|2085
7KGB|1|A|U|2086
7KGB|1|A|A|2087
7KGB|1|A|A|2088
7KGB|1|A|G|2089
*
7KGB|1|A|U|2125
7KGB|1|A|U|2126
7KGB|1|A|A|2127
7KGB|1|A|A|2128
7KGB|1|A|G|2129

Current chains

Chain A

23S rRNA

Nearby chains