IL_7KGB_087

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAC*GCGGG

Length

9 nucleotides

Bulged bases

7KGB|1|A|G|2476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_087 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.2506

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.2

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7KGB|1|A|C|2318
7KGB|1|A|A|2319
7KGB|1|A|A|2320
7KGB|1|A|C|2321
*
7KGB|1|A|G|2473
7KGB|1|A|C|2474
7KGB|1|A|G|2475
7KGB|1|A|G|2476
7KGB|1|A|G|2477

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28