IL_7KGB_135

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_135 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.3925

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7KGB|1|a|G|408
7KGB|1|a|G|409
7KGB|1|a|A|410
7KGB|1|a|U|411
7KGB|1|a|G|412
7KGB|1|a|A|413
7KGB|1|a|C|414
7KGB|1|a|G|415
*
7KGB|1|a|U|426
7KGB|1|a|G|427
7KGB|1|a|U|428
7KGB|1|a|A|429
7KGB|1|a|A|430
7KGB|1|a|A|431
7KGB|1|a|C|432

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4