IL_7KWG_018

3D structure

PDB id

7KWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KWG_018 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.332

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7KWG|1|a|U|417
7KWG|1|a|G|418
7KWG|1|a|A|419
7KWG|1|a|U|420
7KWG|1|a|G|421
7KWG|1|a|A|422
7KWG|1|a|A|423
7KWG|1|a|G|424
*
7KWG|1|a|C|435
7KWG|1|a|G|436
7KWG|1|a|U|437
7KWG|1|a|A|438
7KWG|1|a|A|439
7KWG|1|a|A|440
7KWG|1|a|A|441

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4