IL_7KWG_058

3D structure

PDB id

7KWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KWG_058 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1051

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7KWG|1|a|G|1416
7KWG|1|a|U|1417
7KWG|1|a|C|1418
*
7KWG|1|a|G|1506
7KWG|1|a|U|1507
7KWG|1|a|C|1508

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

mRNA

Chain l

30S ribosomal protein S12