IL_7L20_008

3D structure

PDB id

7L20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7L20|1|A|G|2011, 7L20|1|A|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7L20_008 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1685

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7L20|1|A|G|1906
7L20|1|A|A|1907
7L20|1|A|A|1908
7L20|1|A|A|1909
7L20|1|A|C|1910
*
7L20|1|A|G|2009
7L20|1|A|U|2010
7L20|1|A|G|2011
7L20|1|A|A|2012
7L20|1|A|U|2013
7L20|1|A|A|2014
7L20|1|A|G|2015
7L20|1|A|C|2016

Current chains

Chain A

16S rRNA mitochondrial

Nearby chains

Chain F

39S ribosomal protein L4, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial

Chain i

39S ribosomal protein L51, mitochondrial