IL_7L20_029

3D structure

PDB id

7L20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

7L20|1|A|C|2549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7L20_029 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.2061

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7L20|1|A|C|2548
7L20|1|A|C|2549
7L20|1|A|A|2550
7L20|1|A|G|2551
*
7L20|1|A|C|2566
7L20|1|A|G|2567

Current chains

Chain A

16S rRNA mitochondrial

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial