IL_7LH5_024

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_024 not in the Motif Atlas

Geometric match to IL_6DME_002

Geometric discrepancy: 0.3419

The information below is about IL_6DME_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_44025.1

Basepair signature

cWW-cWW-tHS-cSH-cSH-cWW

Number of instances in this motif group

3

Unit IDs

7LH5|1|AA|G|597
7LH5|1|AA|U|598
7LH5|1|AA|C|599
*
7LH5|1|AA|G|639
7LH5|1|AA|A|640
7LH5|1|AA|U|641
7LH5|1|AA|A|642
7LH5|1|AA|C|643

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AQ

30S ribosomal protein S17