IL_7LH5_066
3D structure
- PDB id
- 7LH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.27 Å
Loop
- Sequence
- UGAGUAGC*GCGAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LH5_066 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.2923
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7LH5|1|BA|U|239
7LH5|1|BA|G|240
7LH5|1|BA|A|241
7LH5|1|BA|G|242
7LH5|1|BA|U|243
7LH5|1|BA|A|244
7LH5|1|BA|G|245
7LH5|1|BA|C|246
*
7LH5|1|BA|G|252
7LH5|1|BA|C|253
7LH5|1|BA|G|254
7LH5|1|BA|A|255
7LH5|1|BA|A|256
7LH5|1|BA|A|257
7LH5|1|BA|G|258
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B8
- 50S ribosomal protein L35
- Chain BP
- 50S ribosomal protein L15
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