IL_7LH5_098

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7LH5|1|BA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_098 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1101

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7LH5|1|BA|C|1208
7LH5|1|BA|G|1209
7LH5|1|BA|A|1210
7LH5|1|BA|U|1211
7LH5|1|BA|G|1212
7LH5|1|BA|A|1213
7LH5|1|BA|A|1214
7LH5|1|BA|G|1215
*
7LH5|1|BA|U|1234
7LH5|1|BA|G|1235
7LH5|1|BA|G|1236
7LH5|1|BA|A|1237
7LH5|1|BA|G|1238

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L20