IL_7LH5_170

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GGACAAC*GCUAAUCC

Length

15 nucleotides

Bulged bases

7LH5|1|CA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_170 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2534

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7LH5|1|CA|G|147
7LH5|1|CA|G|148
7LH5|1|CA|A|149
7LH5|1|CA|C|150
7LH5|1|CA|A|151
7LH5|1|CA|A|152
7LH5|1|CA|C|153
*
7LH5|1|CA|G|168
7LH5|1|CA|C|169
7LH5|1|CA|U|170
7LH5|1|CA|A|171
7LH5|1|CA|A|172
7LH5|1|CA|U|173
7LH5|1|CA|C|174
7LH5|1|CA|C|175

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S ribosomal protein S20