IL_7LH5_194

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_194 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0911

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7LH5|1|CA|C|779
7LH5|1|CA|A|780
7LH5|1|CA|A|781
7LH5|1|CA|A|782
7LH5|1|CA|C|783
*
7LH5|1|CA|G|799
7LH5|1|CA|G|800
7LH5|1|CA|U|801
7LH5|1|CA|A|802
7LH5|1|CA|G|803

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DD

50S ribosomal protein L2