IL_7LH5_211

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7LH5|1|CA|C|1400, 7LH5|1|CA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_211 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.1868

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7LH5|1|CA|C|1399
7LH5|1|CA|C|1400
7LH5|1|CA|G|1401
*
7LH5|1|CA|C|1501
7LH5|1|CA|A|1502
7LH5|1|CA|A|1503
7LH5|1|CA|G|1504

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain CX

mRNA