IL_7LH5_219

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

7LH5|1|CA|G|1442|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_219 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.4552

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

7LH5|1|CA|C|1440
7LH5|1|CA|G|1441
7LH5|1|CA|G|1442
7LH5|1|CA|G|1442|||A
7LH5|1|CA|A|1442|||B
7LH5|1|CA|G|1443
*
7LH5|1|CA|C|1459
7LH5|1|CA|A|1460
7LH5|1|CA|G|1461

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S ribosomal protein S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DT

50S ribosomal protein L19