IL_7LH5_232

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

7LH5|1|DA|U|504, 7LH5|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_232 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0699

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

7LH5|1|DA|G|481
7LH5|1|DA|A|482
7LH5|1|DA|A|483
7LH5|1|DA|C|484
*
7LH5|1|DA|G|496
7LH5|1|DA|A|497
7LH5|1|DA|G|498
7LH5|1|DA|U|499
7LH5|1|DA|G|500
7LH5|1|DA|A|501
7LH5|1|DA|A|502
7LH5|1|DA|A|503
7LH5|1|DA|U|504
7LH5|1|DA|A|505
7LH5|1|DA|G|506
7LH5|1|DA|A|507
7LH5|1|DA|G|508
7LH5|1|DA|C|509

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24