IL_7LH5_271

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

7LH5|1|DA|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_271 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.3095

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7LH5|1|DA|U|1481
7LH5|1|DA|G|1482
*
7LH5|1|DA|C|1506
7LH5|1|DA|A|1507
7LH5|1|DA|A|1508
7LH5|1|DA|C|1509
7LH5|1|DA|A|1509|||A
7LH5|1|DA|A|1509|||B
7LH5|1|DA|G|1510

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L2