IL_7LH5_276

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

7LH5|1|DA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_276 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.0895

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

7LH5|1|DA|A|1669
7LH5|1|DA|C|1670
7LH5|1|DA|U|1671
7LH5|1|DA|C|1672
7LH5|1|DA|U|1673
7LH5|1|DA|G|1674
*
7LH5|1|DA|C|1990
7LH5|1|DA|U|1991
7LH5|1|DA|G|1992
7LH5|1|DA|U|1993

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DO

50S ribosomal protein L14